endrov.windowPlateAnalysis
Class PlateWindowView

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  endrov.windowPlateAnalysis.scene.Scene2DView
                      endrov.windowPlateAnalysis.PlateWindowView

All Implemented Interfaces:

java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible

public class PlateWindowView
extends Scene2DView
implements java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener

View for plates

See Also:

Serialized Form

Nested Class Summary

static interface	PlateWindowView.Listener
static class	PlateWindowView.ValueRange
class	PlateWindowView.WorkerThread Thread that does calculations in the background

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static java.lang.String	aggrHide Instance *
static java.lang.String	aggrHistogram
static java.lang.String	aggrImage
static java.lang.String	aggrScatter
static java.lang.String	layoutByWellID
int	mouseCurX Current mouse coordinate.
int	mouseCurY Current mouse coordinate.
boolean	mouseInWindow Flag if the mouse cursor currently is in the window
int	mouseLastX Last coordinate of the mouse pointer.
int	mouseLastY Last coordinate of the mouse pointer.
java.util.Map<EvPath,endrov.windowPlateAnalysis.PlateWindowView.OneWell>	wellMap Data source: wells

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PlateWindowView(PlateWindowView.Listener listener)
Construct panel

Method Summary

void	addWell(EvPath p, EvChannel channel) Add one well to the panel
void	clearPM() Clear the output PM
void	clearWells() Remove all wells (and thus all data)
void	freeResources() Called when window is closed
static java.lang.Object[]	getAggrModes() Get a list of all aggregation modes
PlateWindowView.ValueRange	getIntensityRange()
void	layoutWells()
void	mouseClicked(java.awt.event.MouseEvent e) Callback: Mouse button clicked
void	mouseDragged(java.awt.event.MouseEvent e) Callback: mouse dragged
void	mouseEntered(java.awt.event.MouseEvent e) Callback: Mouse pointer has entered window
void	mouseExited(java.awt.event.MouseEvent e) Callback: Mouse pointer has left window
void	mouseMoved(java.awt.event.MouseEvent e) Callback: Mouse moved
void	mousePressed(java.awt.event.MouseEvent e) Callback: Mouse button pressed
void	mouseReleased(java.awt.event.MouseEvent e) Callback: Mouse button released
void	mouseWheelMoved(java.awt.event.MouseWheelEvent e) Callback: Mouse scrolls
void	redrawPanel() Take current settings of sliders and apply it to image
void	setAggrMethod(java.lang.Object o, java.lang.String attr1, java.lang.String attr2) Set the aggregation methods to use
void	setContrastBrightness(double contrast, double brightness) Set the contrast and brightness for all images
void	setFlow(EvPath pathToFlow)
void	setFrameZ(EvDecimal frame, EvDecimal z) Set the current frame and z
void	setLayoutMethod(java.lang.String method)
void	setParticleMeasure(ParticleMeasure particleMeasure)
void	setThumbnailImageSize(java.lang.Integer size) Set the size of the thumbnail images, if to be rescaled
void	startWorkerThread()

Methods inherited from class endrov.windowPlateAnalysis.scene.Scene2DView

addElem, clear, dataChangedEvent, getRotation, getZoom, paintComponent, pan, rotateCamera, scaleS2w, scaleW2s, setRotation, setZoom, transformPointS2W, transformPointW2S, transformVectorS2W, zoom, zoomToFit

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

layoutByWellID

public static final java.lang.String layoutByWellID

See Also:

Constant Field Values

aggrHide

public static final java.lang.String aggrHide

Instance *

See Also:

Constant Field Values

aggrImage

public static final java.lang.String aggrImage

See Also:

Constant Field Values

aggrHistogram

public static final java.lang.String aggrHistogram

See Also:

Constant Field Values

aggrScatter

public static final java.lang.String aggrScatter

See Also:

Constant Field Values

mouseLastX

public int mouseLastX

Last coordinate of the mouse pointer. Used to detect moving distance. For event technical reasons, this requires a separate set of variables than dragging (or so it seems)

mouseLastY

public int mouseLastY

Last coordinate of the mouse pointer. Used to detect moving distance. For event technical reasons, this requires a separate set of variables than dragging (or so it seems)

mouseCurX

public int mouseCurX

Current mouse coordinate. Used for repainting.

mouseCurY

public int mouseCurY

Current mouse coordinate. Used for repainting.

mouseInWindow

public boolean mouseInWindow

Flag if the mouse cursor currently is in the window

wellMap

public java.util.Map<EvPath,endrov.windowPlateAnalysis.PlateWindowView.OneWell> wellMap

Data source: wells

Constructor Detail

PlateWindowView

public PlateWindowView(PlateWindowView.Listener listener)

Construct panel

Method Detail

redrawPanel

public void redrawPanel()

Take current settings of sliders and apply it to image

mouseClicked

public void mouseClicked(java.awt.event.MouseEvent e)

Callback: Mouse button clicked

Specified by:

mouseClicked in interface java.awt.event.MouseListener

mousePressed

public void mousePressed(java.awt.event.MouseEvent e)

Callback: Mouse button pressed

Specified by:

mousePressed in interface java.awt.event.MouseListener

mouseReleased

public void mouseReleased(java.awt.event.MouseEvent e)

Callback: Mouse button released

Specified by:

mouseReleased in interface java.awt.event.MouseListener

mouseEntered

public void mouseEntered(java.awt.event.MouseEvent e)

Callback: Mouse pointer has entered window

Specified by:

mouseEntered in interface java.awt.event.MouseListener

mouseExited

public void mouseExited(java.awt.event.MouseEvent e)

Callback: Mouse pointer has left window

Specified by:

mouseExited in interface java.awt.event.MouseListener

mouseMoved

public void mouseMoved(java.awt.event.MouseEvent e)

Callback: Mouse moved

Specified by:

mouseMoved in interface java.awt.event.MouseMotionListener

mouseDragged

public void mouseDragged(java.awt.event.MouseEvent e)

Callback: mouse dragged

Specified by:

mouseDragged in interface java.awt.event.MouseMotionListener

mouseWheelMoved

public void mouseWheelMoved(java.awt.event.MouseWheelEvent e)

Callback: Mouse scrolls

Specified by:

mouseWheelMoved in interface java.awt.event.MouseWheelListener

setLayoutMethod

public void setLayoutMethod(java.lang.String method)

layoutWells

public void layoutWells()

clearWells

public void clearWells()

Remove all wells (and thus all data)

addWell

public void addWell(EvPath p,
                    EvChannel channel)

Add one well to the panel

setAggrMethod

public void setAggrMethod(java.lang.Object o,
                          java.lang.String attr1,
                          java.lang.String attr2)

Set the aggregation methods to use

getAggrModes

public static java.lang.Object[] getAggrModes()

Get a list of all aggregation modes

setParticleMeasure

public void setParticleMeasure(ParticleMeasure particleMeasure)

setFlow

public void setFlow(EvPath pathToFlow)

setContrastBrightness

public void setContrastBrightness(double contrast,
                                  double brightness)

Set the contrast and brightness for all images

setFrameZ

public void setFrameZ(EvDecimal frame,
                      EvDecimal z)

Set the current frame and z

freeResources

public void freeResources()

Called when window is closed

getIntensityRange

public PlateWindowView.ValueRange getIntensityRange()

setThumbnailImageSize

public void setThumbnailImageSize(java.lang.Integer size)

Set the size of the thumbnail images, if to be rescaled

Parameters:

size - Null if no rescale

clearPM

public void clearPM()

Clear the output PM

startWorkerThread

public void startWorkerThread()