endrov.windowPlateAnalysis
Class PlateWindow

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  endrov.gui.window.EvBasicWindow
                      endrov.windowPlateAnalysis.PlateWindow

All Implemented Interfaces:

PlateWindowView.Listener, java.awt.event.ActionListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ChangeListener

public class PlateWindow
extends EvBasicWindow
implements javax.swing.event.ChangeListener, java.awt.event.ActionListener, PlateWindowView.Listener

Plate window - For high-throughput analysis

See Also:

Serialized Form

Nested Class Summary

class

PlateWindow.ChannelWidget One row of channel settings in the GUI

Nested classes/interfaces inherited from class endrov.gui.window.EvBasicWindow

EvBasicWindow.DialogReturnStatus, EvBasicWindow.EvWindowManagerMaker

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BaselineResizeBehavior, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

Fields inherited from class endrov.gui.window.EvBasicWindow

jinputListeners, KEY_GETCONSOLE, lastDataPath, menuFile, windowInstance, windowManager

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PlateWindow()
Make a new window at given location

Method Summary

void	actionPerformed(java.awt.event.ActionEvent e)
void	attributesMayHaveUpdated()
void	dataChangedEvent() Called whenever data has been updated
EvDecimal	getFrame()
PlateAnalysisQueueWidget.WellRunnable	getNextBackgroundTask()
ParticleMeasure	getParticleMeasure()
double	getRotation() Get rotation of image, in radians
EvDecimal	getZ()
double	getZoom() Get the zoom factor not including the binning
static void	initPlugin()
static void	main(java.lang.String[] args) Testing
void	setFrame(EvDecimal frame)
void	setRotation(double angle) Set rotation of image, in radians
void	setZ(EvDecimal z)
void	setZoom(double zoom) Set the zoom factor not including the binning
void	stateChanged(javax.swing.event.ChangeEvent e) Upon state changes, update the window
void	updateImagePanelFrameZ()
void	updateLayoutCombo()
void	updateWells() Update which wells exist, and their content
void	updateWindowTitle()
void	windowEventUserLoadedFile(EvData data) Called when a file has just been loaded and should be displayed in all windows
void	windowFreeResources() Called when the window is closed.
java.lang.String	windowHelpTopic() Help on how to use this window.
void	windowLoadPersonalSettings(org.jdom.Element e)
void	windowSavePersonalSettings(org.jdom.Element root) Store down settings for window into personal config file

Methods inherited from class endrov.gui.window.EvBasicWindow

addBasicWindowExtension, addHook, addMainMenubarCommon, addMainMenubarWindowSpecific, addMenuItemSorted, addMenuItemSorted, addMenuOperation, addMenuSorted, addMenuWindow, attachDragAndDrop, attachJinputListener, convertStreamToString, convertStreamToString, createMenus, dialogAbout, dialogPreferences, dialogQuit, dialogSysInfo, disposeEvWindow, finalize, freeResourcesBasic, getBounds, getBoundsEvWindow, getCreateMenuWindowCategory, getEvw, getLastDataPath, getWindowList, getXMLbounds, getXMLposition, holdModifier1, openDialogChooseDir, openDialogOpenFile, openDialogSaveFile, packEvWindow, setAcceleratorCopy, setAcceleratorCut, setAcceleratorDelete, setAcceleratorPaste, setBoundsEvWindow, setBoundsEvWindow, setBoundsEvWindow, setLastDataPath, setLocationEvWindow, setLocationEvWindow, setResizable, setTitleEvWindow, setVisibleEvWindow, setXMLbounds, showConfirmYesNoCancelDialog, showConfirmYesNoDialog, showErrorDialog, showInformativeDialog, showInputDialog, showWarningDialog, toFront, transferableToFileList, updateLoadedFile, updateWindows, updateWindows

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBaseline, getBaselineResizeBehavior, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingForPrint, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

PlateWindow

public PlateWindow()

Make a new window at given location

Method Detail

windowSavePersonalSettings

public void windowSavePersonalSettings(org.jdom.Element root)

Store down settings for window into personal config file

Specified by:

windowSavePersonalSettings in class EvBasicWindow

windowLoadPersonalSettings

public void windowLoadPersonalSettings(org.jdom.Element e)

Specified by:

windowLoadPersonalSettings in class EvBasicWindow

getZoom

public double getZoom()

Get the zoom factor not including the binning

setZoom

public void setZoom(double zoom)

Set the zoom factor not including the binning

getRotation

public double getRotation()

Get rotation of image, in radians

setRotation

public void setRotation(double angle)

Set rotation of image, in radians

updateWindowTitle

public void updateWindowTitle()

updateLayoutCombo

public void updateLayoutCombo()

dataChangedEvent

public void dataChangedEvent()

Called whenever data has been updated

Specified by:

dataChangedEvent in class EvBasicWindow

updateWells

public void updateWells()

Update which wells exist, and their content

getParticleMeasure

public ParticleMeasure getParticleMeasure()

stateChanged

public void stateChanged(javax.swing.event.ChangeEvent e)

Upon state changes, update the window

Specified by:

stateChanged in interface javax.swing.event.ChangeListener

See Also:

ChangeListener.stateChanged(javax.swing.event.ChangeEvent)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

windowEventUserLoadedFile

public void windowEventUserLoadedFile(EvData data)

Description copied from class: EvBasicWindow

Called when a file has just been loaded and should be displayed in all windows

Specified by:

windowEventUserLoadedFile in class EvBasicWindow

windowFreeResources

public void windowFreeResources()

Description copied from class: EvBasicWindow

Called when the window is closed. Should take care of deallocating and stopping any threads

Specified by:

windowFreeResources in class EvBasicWindow

getFrame

public EvDecimal getFrame()

getZ

public EvDecimal getZ()

setFrame

public void setFrame(EvDecimal frame)

setZ

public void setZ(EvDecimal z)

updateImagePanelFrameZ

public void updateImagePanelFrameZ()

main

public static void main(java.lang.String[] args)

Testing

Parameters:

args -

windowHelpTopic

public java.lang.String windowHelpTopic()

Description copied from class: EvBasicWindow

Help on how to use this window. Can return null

Specified by:

windowHelpTopic in class EvBasicWindow

attributesMayHaveUpdated

public void attributesMayHaveUpdated()

Specified by:

attributesMayHaveUpdated in interface PlateWindowView.Listener

getNextBackgroundTask

public PlateAnalysisQueueWidget.WellRunnable getNextBackgroundTask()

Specified by:

getNextBackgroundTask in interface PlateWindowView.Listener

initPlugin

public static void initPlugin()