endrov.typeLineage
Class LineageCommonUI

java.lang.Object
  endrov.typeLineage.LineageCommonUI

All Implemented Interfaces:

java.awt.event.ActionListener, java.util.EventListener

public class LineageCommonUI
extends java.lang.Object
implements java.awt.event.ActionListener

Common GUI functions for Lineage, mainly menus

Field Summary

static java.util.HashSet<LineageSelParticle>	hiddenParticles Currently hidden particles.
javax.swing.JMenuItem	miPrintAngle
javax.swing.JMenuItem	miPrintCountParticlesAtFrame
javax.swing.JMenuItem	miPrintCountParticlesUpToFrame
javax.swing.JMenuItem	miPrintPos
javax.swing.JMenu	miThisMeshRender
javax.swing.JMenuItem	miThisMeshRenderNull
javax.swing.JMenuItem	miThisMeshRenderOff
javax.swing.JMenuItem	miThisMeshRenderSolid
javax.swing.JMenuItem	miThisMeshRenderWireframe

Constructor Summary

LineageCommonUI(javax.swing.JComponent parent, TimedDataWindowInterface fc)
Currently hovered cell

Method Summary

static void	actionAssocParent() Associate parent
static void	actionAssocParent(Lineage lin, java.lang.String parentName, java.util.Collection<java.lang.String> childNames) Associate many particles to one parent
static void	actionCreateAP(Lineage lin, java.lang.String nucName)
static void	actionCreateEmptyChild(Lineage lin, java.lang.String nucName) Create an empty child (no coordinates)
static void	actionDivideParticle(Lineage lin, java.lang.String parentName, EvDecimal frame) Divide a particle at the specified frame.
static void	actionMergeNuclei() Merge the frames etc of two particles
void	actionPerformed(java.awt.event.ActionEvent e)
static void	actionPrintAngle(EvDecimal frame) Calculate angles between selected particles
static void	actionPrintPos(EvDecimal frame) Show position of selected particles in console
static void	actionRecursiveSelectChildren() Recursively select children of selected parents.
static void	actionRecursiveSelectParents(Lineage lin, java.lang.String nucName) Recursively select parents
static void	actionRemove(java.util.Collection<LineageSelParticle> nucs) Remove selected particles
static void	actionSelectAll(Lineage lin)
static void	actionSetDesc(java.util.Collection<LineageSelParticle> nucs) Set description of particle
static void	actionSetEndFrame(java.util.Collection<LineageSelParticle> nucs, EvDecimal frame)
static void	actionSetEndFrameDialog(java.util.Collection<LineageSelParticle> nucs) Set override end frame of particle
static void	actionSetStartFrame(java.util.Collection<LineageSelParticle> nucs, EvDecimal frame)
static void	actionSetStartFrameDialog(java.util.Collection<LineageSelParticle> nucs) Set override start frame of particle
static void	actionSwapChildren() Swap the names of two children (but not the tree structure)
static void	actionSwapContentsOfTwo(Lineage lin, java.lang.String nucNameA, java.lang.String nucNameB) Swap the contents of two particles
static void	actionUnassocParent() Unassociate parent
void	addToMenu(javax.swing.JComponent menuLineage, boolean addAccel)
static Lineage.Particle	getHoveredParticle()
static Lineage	getHoveredParticleLineage()
static LineageSelParticle	getHoveredParticleSelectedOrNull()
static Lineage.ParticlePos	getOrInterpolatePosCopy(Lineage lin, java.lang.String name, EvDecimal frame) Return a copy of the position at a frame, interpolate if needed
static java.util.HashSet<LineageSelParticle>	getSelectedOrHoveredParticle()
static java.util.HashSet<LineageSelParticle>	getSelectedParticleClone() Make sure objects are not modified - at the moment there is no semantic difference compared to the other method but this might change in the future.
static java.util.HashSet<LineageSelParticle>	getSelectedParticles() Get selected particles.
static javax.swing.JMenu	makeSetColorMenu(EvColor... exclude) Generate a menu for setting color on particles
static void	mapModel(EvContainer con, Lineage lin) Map e.g.
static void	mouseSelectObject(EvSelection.EvSelectable sel, boolean shift) Selection of particles by mouse and keyboard
void	setThisMeshRenderMode(Lineage.MeshRenderMode rm)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

miPrintAngle

public javax.swing.JMenuItem miPrintAngle

miPrintPos

public javax.swing.JMenuItem miPrintPos

miPrintCountParticlesAtFrame

public javax.swing.JMenuItem miPrintCountParticlesAtFrame

miPrintCountParticlesUpToFrame

public javax.swing.JMenuItem miPrintCountParticlesUpToFrame

miThisMeshRender

public javax.swing.JMenu miThisMeshRender

miThisMeshRenderNull

public javax.swing.JMenuItem miThisMeshRenderNull

miThisMeshRenderOff

public javax.swing.JMenuItem miThisMeshRenderOff

miThisMeshRenderSolid

public javax.swing.JMenuItem miThisMeshRenderSolid

miThisMeshRenderWireframe

public javax.swing.JMenuItem miThisMeshRenderWireframe

hiddenParticles

public static java.util.HashSet<LineageSelParticle> hiddenParticles

Currently hidden particles. currently no sample. needed?

Constructor Detail

LineageCommonUI

public LineageCommonUI(javax.swing.JComponent parent,
                       TimedDataWindowInterface fc)

Currently hovered cell

Method Detail

addToMenu

public void addToMenu(javax.swing.JComponent menuLineage,
                      boolean addAccel)

actionPerformed

public void actionPerformed(java.awt.event.ActionEvent e)

Specified by:

actionPerformed in interface java.awt.event.ActionListener

setThisMeshRenderMode

public void setThisMeshRenderMode(Lineage.MeshRenderMode rm)

getHoveredParticleSelectedOrNull

public static LineageSelParticle getHoveredParticleSelectedOrNull()

getHoveredParticleLineage

public static Lineage getHoveredParticleLineage()

getHoveredParticle

public static Lineage.Particle getHoveredParticle()

mouseSelectObject

public static void mouseSelectObject(EvSelection.EvSelectable sel,
                                     boolean shift)

Selection of particles by mouse and keyboard

Parameters:

sel - Which particles, never null

shift - True if shift-key held

getSelectedParticleClone

public static java.util.HashSet<LineageSelParticle> getSelectedParticleClone()

Make sure objects are not modified - at the moment there is no semantic difference compared to the other method but this might change in the future. it guarantees that the selection set is really a copy and will not be modified outside the scope

getSelectedParticles

public static java.util.HashSet<LineageSelParticle> getSelectedParticles()

Get selected particles. Also ensures that no invalid selections are included (nuclei that does not exist). If a cell is hovered then

getSelectedOrHoveredParticle

public static java.util.HashSet<LineageSelParticle> getSelectedOrHoveredParticle()

actionDivideParticle

public static void actionDivideParticle(Lineage lin,
                                        java.lang.String parentName,
                                        EvDecimal frame)

Divide a particle at the specified frame. Only works if the cell to divide has no children

actionUnassocParent

public static void actionUnassocParent()

Unassociate parent

actionAssocParent

public static void actionAssocParent()

Associate parent

actionAssocParent

public static void actionAssocParent(Lineage lin,
                                     java.lang.String parentName,
                                     java.util.Collection<java.lang.String> childNames)

Associate many particles to one parent

actionMergeNuclei

public static void actionMergeNuclei()

Merge the frames etc of two particles

actionSwapChildren

public static void actionSwapChildren()

Swap the names of two children (but not the tree structure)

actionSwapContentsOfTwo

public static void actionSwapContentsOfTwo(Lineage lin,
                                           java.lang.String nucNameA,
                                           java.lang.String nucNameB)

Swap the contents of two particles

actionSetEndFrameDialog

public static void actionSetEndFrameDialog(java.util.Collection<LineageSelParticle> nucs)

Set override end frame of particle

actionSetEndFrame

public static void actionSetEndFrame(java.util.Collection<LineageSelParticle> nucs,
                                     EvDecimal frame)

actionSetStartFrameDialog

public static void actionSetStartFrameDialog(java.util.Collection<LineageSelParticle> nucs)

Set override start frame of particle

actionSetStartFrame

public static void actionSetStartFrame(java.util.Collection<LineageSelParticle> nucs,
                                       EvDecimal frame)

actionRemove

public static void actionRemove(java.util.Collection<LineageSelParticle> nucs)

Remove selected particles

actionSetDesc

public static void actionSetDesc(java.util.Collection<LineageSelParticle> nucs)

Set description of particle

actionRecursiveSelectChildren

public static void actionRecursiveSelectChildren()

Recursively select children of selected parents. This is never more than O(number of particles in lineages)

actionRecursiveSelectParents

public static void actionRecursiveSelectParents(Lineage lin,
                                                java.lang.String nucName)

Recursively select parents

actionSelectAll

public static void actionSelectAll(Lineage lin)

actionPrintPos

public static void actionPrintPos(EvDecimal frame)

Show position of selected particles in console

Parameters:

frame -

actionPrintAngle

public static void actionPrintAngle(EvDecimal frame)

Calculate angles between selected particles

Parameters:

frame -

makeSetColorMenu

public static javax.swing.JMenu makeSetColorMenu(EvColor... exclude)

Generate a menu for setting color on particles

getOrInterpolatePosCopy

public static Lineage.ParticlePos getOrInterpolatePosCopy(Lineage lin,
                                                          java.lang.String name,
                                                          EvDecimal frame)

Return a copy of the position at a frame, interpolate if needed

mapModel

public static void mapModel(EvContainer con,
                            Lineage lin)

Map e.g. the c.elegans model onto this lineage

actionCreateEmptyChild

public static void actionCreateEmptyChild(Lineage lin,
                                          java.lang.String nucName)

Create an empty child (no coordinates)

actionCreateAP

public static void actionCreateAP(Lineage lin,
                                  java.lang.String nucName)